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{{Image|Muncprotein.jpg|right|175px|Inman M ( ) Shape of a common protein module suggests role as molecular switch.}}
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'''[[Macromolecular chemistry]]''' is the study of the physical, biological and chemical structure, properties, composition, and reaction mechanisms of [[macromolecules]]. A macromolecule is a molecule that consists of one or more types of repeated 'building blocks'. The building blocks are called  [[Monomer|monomeric unit]]s (monomers).
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Macromolecules (also known as polymer molecules) appear in daily life in the form of [[plastic]], [[styrofoam]], [[nylon]], etc. These [[polymer]]s, i.e., substances consisting of polymer molecules, are of great technological importance and are used in the manufacturing of all sorts of goods, from automobile parts to household appliances. The artificial polymer molecules usually exist of long repetitions of identical monomers, either in chains or networks. 
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In molecular biology macromolecules (biopolymers) play a very important role: the well-known molecules [[DNA]], [[RNA]], and [[polypeptides]] ([[proteins]]) are examples of macromolecules. In molecular biology one is mostly interested in  macromolecules in solution, usually dissolved in water.  The biological function  of macromolecules in living cells is  a highly relevant and widely studied topic of research. Although, strictly speaking, biopolymers belong to the class of polymer molecules, there is a tendency not to use the latter name in biological applications, but to speak of macromolecules. The term "polymer"  is usually reserved  for the substances  manufactured in bulk by the chemical industry. 
 
In industry, the value of synthetic macromolecules as plastics and nylon, has risen enormously over the last 60 years. They have made it possible to mould shapes that would have been impossible to create without them. When they were first developed, their resistance to rupture and degradation was seen as a profound advantage, but nowadays we seek more biologically degradable plastics such as polyethyleneglycol that pollute the environment less.
 
Biological macromolecules include, besides the molecules already mentioned, [[enzyme]]s, and [[polysaccharide]]s, such as cellulose and starch. The better understanding  of the basic behavior of polymer molecules has enhanced our knowledge of these biological molecules, and studies of partially charged [[polyelectrolytes]] have led to a deeper insight into their biological function. The investigations of the three-dimensional structure of macromolecules, (their [[configuration]] and [[conformation]]), have led to the identification of specific regions that perform specialized activities. A good example is the catalytic role of particular amino acid residues in polypeptide enzymes and the role of [[functional group]]s such as [[biotin]] or [[riboflavin]] in cellular metabolism. The folding of macromolecules is now a topic of much scientific investigation, since the correct folding of these polymers is a critical factor for normal function. Abnormal folding of particular proteins is the cause of several diseases, including [[Alzheimer disease|Alzheimer's]] and [[Creutzfeldt-Jakob disease]] (CJD) .

Latest revision as of 10:19, 11 September 2020

In computational molecular physics and solid state physics, the Born-Oppenheimer approximation is used to separate the quantum mechanical motion of the electrons from the motion of the nuclei. The method relies on the large mass ratio of electrons and nuclei. For instance the lightest nucleus, the hydrogen nucleus, is already 1836 times heavier than an electron. The method is named after Max Born and Robert Oppenheimer[1], who proposed it in 1927.

Rationale

The computation of the energy and wave function of an average-size molecule is a formidable task that is alleviated by the Born-Oppenheimer (BO) approximation.The BO approximation makes it possible to compute the wave function in two less formidable, consecutive, steps. This approximation was proposed in the early days of quantum mechanics by Born and Oppenheimer (1927) and is indispensable in quantum chemistry and ubiquitous in large parts of computational physics.

In the first step of the BO approximation the electronic Schrödinger equation is solved, yielding a wave function depending on electrons only. For benzene this wave function depends on 126 electronic coordinates. During this solution the nuclei are fixed in a certain configuration, very often the equilibrium configuration. If the effects of the quantum mechanical nuclear motion are to be studied, for instance because a vibrational spectrum is required, this electronic computation must be repeated for many different nuclear configurations. The set of electronic energies thus computed becomes a function of the nuclear coordinates. In the second step of the BO approximation this function serves as a potential in a Schrödinger equation containing only the nuclei—for benzene an equation in 36 variables.

The success of the BO approximation is due to the high ratio between nuclear and electronic masses. The approximation is an important tool of quantum chemistry, without it only the lightest molecule, H2, could be handled; all computations of molecular wave functions for larger molecules make use of it. Even in the cases where the BO approximation breaks down, it is used as a point of departure for the computations.

Historical note

The Born-Oppenheimer approximation is named after M. Born and R. Oppenheimer who wrote a paper [Annalen der Physik, vol. 84, pp. 457-484 (1927)] entitled: Zur Quantentheorie der Molekeln (On the Quantum Theory of Molecules). This paper describes the separation of electronic motion, nuclear vibrations, and molecular rotation. A reader of this paper who expects to find clearly delineated the BO approximation—as it is explained above and in most modern textbooks—will be disappointed. The presentation of the BO approximation is well hidden in Taylor expansions (in terms of internal and external nuclear coordinates) of (i) electronic wave functions, (ii) potential energy surfaces and (iii) nuclear kinetic energy terms. Internal coordinates are the relative positions of the nuclei in the molecular equilibrium and their displacements (vibrations) from equilibrium. External coordinates are the position of the center of mass and the orientation of the molecule. The Taylor expansions complicate the theory tremendously and make the derivations very hard to follow. Moreover, knowing that the proper separation of vibrations and rotations was not achieved in this work, but only eight years later [by C. Eckart, Physical Review, vol. 46, pp. 383-387 (1935)] (see Eckart conditions), chemists and molecular physicists are not very much motivated to invest much effort into understanding the work by Born and Oppenheimer, however famous it may be. Although the article still collects many citations each year, it is safe to say that it is not read anymore, except maybe by historians of science.

Footnotes

  1. Wikipedia has an article about Robert Oppenheimer.